IL_9PIH_085

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9PIH|1|a|G|776, 9PIH|1|a|A|788, 9PIH|1|a|A|789, 9PIH|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PIH_085 not in the Motif Atlas

Geometric match to IL_9E6Q_032

Geometric discrepancy: 0.0255

The information below is about IL_9E6Q_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9PIH|1|a|G|775
9PIH|1|a|G|776
9PIH|1|a|G|777
*
9PIH|1|a|C|787
9PIH|1|a|A|788
9PIH|1|a|A|789
9PIH|1|a|U|790
9PIH|1|a|C|791

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain r

50S ribosomal protein L22