IL_9PII_129

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9PII|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PII_129 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0561

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9PII|1|a|U|1712
9PII|1|a|A|1713
9PII|1|a|U|1714
9PII|1|a|G|1715
9PII|1|a|U|1716
9PII|1|a|A|1717
9PII|1|a|G|1718
*
9PII|1|a|U|1742
9PII|1|a|G|1743
9PII|1|a|A|1744
9PII|1|a|A|1745
9PII|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains