IL_9PIJ_104
3D structure
- PDB id
- 9PIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 9PIJ|1|a|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PIJ_104 not in the Motif Atlas
- Geometric match to IL_8B0X_104
- Geometric discrepancy: 0.1177
- The information below is about IL_8B0X_104
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9PIJ|1|a|C|1043
9PIJ|1|a|C|1044
9PIJ|1|a|C|1045
9PIJ|1|a|A|1046
9PIJ|1|a|G|1047
9PIJ|1|a|A|1048
9PIJ|1|a|C|1049
9PIJ|1|a|A|1050
9PIJ|1|a|G|1051
*
9PIJ|1|a|U|1108
9PIJ|1|a|C|1109
9PIJ|1|a|G|1110
9PIJ|1|a|A|1111
9PIJ|1|a|G|1112
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: