IL_9PJ7_042

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_042 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.271

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_49794.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9PJ7|1|A|G|977
9PJ7|1|A|A|978
9PJ7|1|A|C|979
9PJ7|1|A|A|980
9PJ7|1|A|U|981
*
9PJ7|1|A|A|1029
9PJ7|1|A|C|1030

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain S

30S ribosomal protein S14 type Z