IL_9PJ7_057

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

9PJ7|1|A|5MC|1387, 9PJ7|1|A|A|1490

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_057 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1651

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9PJ7|1|A|C|1386
9PJ7|1|A|5MC|1387
9PJ7|1|A|G|1388
*
9PJ7|1|A|C|1488
9PJ7|1|A|A|1489
9PJ7|1|A|A|1490
9PJ7|1|A|G|1491

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain X

AURKAIP1/COX24 domain-containing protein

Chain Y

mRNA 32MF