IL_9PJ7_063

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_063 not in the Motif Atlas

Geometric match to IL_9H3G_114

Geometric discrepancy: 0.1629

The information below is about IL_9H3G_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9PJ7|1|A|U|1411
9PJ7|1|A|A|1412
9PJ7|1|A|A|1413
9PJ7|1|A|C|1414
*
9PJ7|1|A|G|1460
9PJ7|1|A|G|1461
9PJ7|1|A|G|1462
9PJ7|1|A|A|1463

Current chains

Chain A

16S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA