IL_9PJ7_088

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AU*GGU

Length

5 nucleotides

Bulged bases

9PJ7|1|a|G|814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_088 not in the Motif Atlas

Homologous match to IL_7A0S_017

Geometric discrepancy: 0.1316

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

9PJ7|1|a|A|787
9PJ7|1|a|U|788
*
9PJ7|1|a|G|813
9PJ7|1|a|G|814
9PJ7|1|a|U|815

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2