IL_9PJ7_101

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_101 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.1357

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9PJ7|1|a|U|960
9PJ7|1|a|C|961
9PJ7|1|a|U|962
9PJ7|1|a|A|963
9PJ7|1|a|G|964
*
9PJ7|1|a|C|982
9PJ7|1|a|G|983
9PJ7|1|a|A|984
9PJ7|1|a|A|985
9PJ7|1|a|A|986

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L25