IL_9PJ7_102

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

9PJ7|1|a|A|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_102 not in the Motif Atlas

Geometric match to IL_9E6Q_079

Geometric discrepancy: 0.3896

The information below is about IL_9E6Q_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9PJ7|1|a|G|965
9PJ7|1|a|G|966
9PJ7|1|a|G|967
*
9PJ7|1|a|U|978
9PJ7|1|a|U|979
9PJ7|1|a|A|980
9PJ7|1|a|C|981

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L25