IL_9PJ7_114

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9PJ7|1|a|U|1306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_114 not in the Motif Atlas

Geometric match to IL_4O26_001

Geometric discrepancy: 0.3045

The information below is about IL_4O26_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9PJ7|1|a|C|1295
9PJ7|1|a|C|1296
*
9PJ7|1|a|G|1305
9PJ7|1|a|U|1306
9PJ7|1|a|G|1307

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20