IL_9PJ7_117

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCAA*UGC

Length

8 nucleotides

Bulged bases

9PJ7|1|a|G|1408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_117 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2607

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9PJ7|1|a|G|1395
9PJ7|1|a|U|1396
9PJ7|1|a|C|1397
9PJ7|1|a|A|1398
9PJ7|1|a|A|1399
*
9PJ7|1|a|U|1407
9PJ7|1|a|G|1408
9PJ7|1|a|C|1409

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain s

50S ribosomal protein L23