IL_9PJ7_123

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*UGAG

Length

7 nucleotides

Bulged bases

9PJ7|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_123 not in the Motif Atlas

Geometric match to IL_9PN5_227

Geometric discrepancy: 0.3459

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9PJ7|1|a|C|1597
9PJ7|1|a|U|1598
9PJ7|1|a|G|1599
*
9PJ7|1|a|U|1762
9PJ7|1|a|G|1763
9PJ7|1|a|A|1764
9PJ7|1|a|G|1765

Current chains

Chain a

23S rRNA

Nearby chains