IL_9PJ7_146

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAG*CGUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_146 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.1887

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9PJ7|1|a|U|2047
9PJ7|1|a|G|2048
9PJ7|1|a|A|2049
9PJ7|1|a|G|2050
*
9PJ7|1|a|C|2057
9PJ7|1|a|G|2058
9PJ7|1|a|U|2059
9PJ7|1|a|A|2060
9PJ7|1|a|G|2061

Current chains

Chain a

23S rRNA

Nearby chains