IL_9PJ7_154

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGU*AA

Length

5 nucleotides

Bulged bases

9PJ7|1|a|G|2384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_154 not in the Motif Atlas

Geometric match to IL_8GLP_072

Geometric discrepancy: 0.3637

The information below is about IL_8GLP_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

9PJ7|1|a|U|2383
9PJ7|1|a|G|2384
9PJ7|1|a|U|2385
*
9PJ7|1|a|A|2403
9PJ7|1|a|A|2404

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28