IL_9PJ7_173

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UU*AUGG

Length

6 nucleotides

Bulged bases

9PJ7|1|a|U|2894, 9PJ7|1|a|G|2895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_173 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2818

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

9PJ7|1|a|U|2877
9PJ7|1|a|U|2878
*
9PJ7|1|a|A|2893
9PJ7|1|a|U|2894
9PJ7|1|a|G|2895
9PJ7|1|a|G|2896

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain o

50S ribosomal protein L19