IL_9PJ7_182
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUCCC*GAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ7_182 not in the Motif Atlas
- Homologous match to IL_4V9F_104
- Geometric discrepancy: 0.1282
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.13
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9PJ7|1|b|G|34
9PJ7|1|b|U|35
9PJ7|1|b|C|36
9PJ7|1|b|C|37
9PJ7|1|b|C|38
*
9PJ7|1|b|G|44
9PJ7|1|b|A|45
9PJ7|1|b|A|46
9PJ7|1|b|C|47
9PJ7|1|b|C|48
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L31
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
Coloring options: