IL_9PJ8_026
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 9PJ8|1|A|A|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_026 not in the Motif Atlas
- Homologous match to IL_6CZR_134
- Geometric discrepancy: 0.1207
- The information below is about IL_6CZR_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.5
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|A|C|551
9PJ8|1|A|G|552
9PJ8|1|A|U|553
9PJ8|1|A|A|554
9PJ8|1|A|A|555
9PJ8|1|A|A|556
9PJ8|1|A|G|557
*
9PJ8|1|A|C|864
9PJ8|1|A|G|865
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
- Chain X
- AURKAIP1/COX24 domain-containing protein
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