IL_9PJ8_039
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_039 not in the Motif Atlas
- Homologous match to IL_6CZR_364
- Geometric discrepancy: 0.1271
- The information below is about IL_6CZR_364
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|A|G|871
9PJ8|1|A|G|872
9PJ8|1|A|A|873
9PJ8|1|A|G|874
9PJ8|1|A|U|875
9PJ8|1|A|A|876
9PJ8|1|A|C|877
9PJ8|1|A|G|878
*
9PJ8|1|A|U|889
9PJ8|1|A|A|890
9PJ8|1|A|A|891
9PJ8|1|A|A|892
9PJ8|1|A|A|893
9PJ8|1|A|C|894
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain X
- AURKAIP1/COX24 domain-containing protein
Coloring options: