IL_9PJ8_042

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9PJ8|1|A|C|918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_042 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.1598

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9PJ8|1|A|G|917
9PJ8|1|A|C|918
9PJ8|1|A|A|919
*
9PJ8|1|A|U|1367
9PJ8|1|A|U|1368
9PJ8|1|A|C|1369
9PJ8|1|A|C|1370
9PJ8|1|A|C|1371

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain I

30S ribosomal protein S7

Chain J

30S ribosomal protein S9