IL_9PJ8_049

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9PJ8|1|A|C|1186, 9PJ8|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_049 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2202

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9PJ8|1|A|G|1042
9PJ8|1|A|G|1043
*
9PJ8|1|A|U|1185
9PJ8|1|A|C|1186
9PJ8|1|A|A|1187
9PJ8|1|A|U|1188
9PJ8|1|A|C|1189

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain M

Small ribosomal subunit protein uS10

Chain S

30S ribosomal protein S14 type Z