IL_9PJ8_052
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUUGC*GGACUC
- Length
- 11 nucleotides
- Bulged bases
- 9PJ8|1|A|U|1111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_052 not in the Motif Atlas
- Geometric match to IL_8B0X_050
- Geometric discrepancy: 0.3001
- The information below is about IL_8B0X_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9PJ8|1|A|G|1109
9PJ8|1|A|U|1110
9PJ8|1|A|U|1111
9PJ8|1|A|G|1112
9PJ8|1|A|C|1113
*
9PJ8|1|A|G|1130
9PJ8|1|A|G|1131
9PJ8|1|A|A|1132
9PJ8|1|A|C|1133
9PJ8|1|A|U|1134
9PJ8|1|A|C|1135
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S9
- Chain M
- Small ribosomal subunit protein uS10
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