IL_9PJ8_062
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (5MC)AA*UAAG
- Length
- 7 nucleotides
- Bulged bases
- 9PJ8|1|A|A|1480
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_062 not in the Motif Atlas
- Geometric match to IL_4P3U_001
- Geometric discrepancy: 0.2897
- The information below is about IL_4P3U_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
9PJ8|1|A|5MC|1394
9PJ8|1|A|A|1395
9PJ8|1|A|A|1396
*
9PJ8|1|A|U|1478
9PJ8|1|A|A|1479
9PJ8|1|A|A|1480
9PJ8|1|A|G|1481
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain X
- AURKAIP1/COX24 domain-containing protein
- Chain Y
- mRNA 32MF
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: