IL_9PJ8_071
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_071 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.0803
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PJ8|1|a|G|23
9PJ8|1|a|U|24
9PJ8|1|a|G|25
9PJ8|1|a|G|26
9PJ8|1|a|A|27
9PJ8|1|a|U|28
9PJ8|1|a|G|29
*
9PJ8|1|a|C|598
9PJ8|1|a|U|599
9PJ8|1|a|G|600
9PJ8|1|a|A|601
9PJ8|1|a|A|602
9PJ8|1|a|A|603
9PJ8|1|a|C|604
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
Coloring options: