IL_9PJ8_078
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAAGUG*CUUAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_078 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.0985
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9PJ8|1|a|G|195
9PJ8|1|a|G|196
9PJ8|1|a|A|197
9PJ8|1|a|A|198
9PJ8|1|a|G|199
9PJ8|1|a|U|200
9PJ8|1|a|G|201
*
9PJ8|1|a|C|208
9PJ8|1|a|U|209
9PJ8|1|a|U|210
9PJ8|1|a|A|211
9PJ8|1|a|G|212
9PJ8|1|a|U|213
9PJ8|1|a|A|214
9PJ8|1|a|C|215
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L28
Coloring options: