IL_9PJ8_088
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAGC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9PJ8|1|a|G|886, 9PJ8|1|a|G|890
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_088 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1566
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PJ8|1|a|G|759
9PJ8|1|a|A|760
9PJ8|1|a|A|761
9PJ8|1|a|G|762
9PJ8|1|a|C|763
*
9PJ8|1|a|G|884
9PJ8|1|a|U|885
9PJ8|1|a|G|886
9PJ8|1|a|A|887
9PJ8|1|a|U|888
9PJ8|1|a|A|889
9PJ8|1|a|G|890
9PJ8|1|a|C|891
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
Coloring options: