IL_9PJ8_102

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_102 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.3282

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

9PJ8|1|a|G|955
9PJ8|1|a|A|956
9PJ8|1|a|U|957
*
9PJ8|1|a|A|989
9PJ8|1|a|G|990
9PJ8|1|a|C|991

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L25