IL_9PJ8_109
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUCAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 9PJ8|1|a|U|1225, 9PJ8|1|a|A|1227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_109 not in the Motif Atlas
- Homologous match to IL_7A0S_036
- Geometric discrepancy: 0.2758
- The information below is about IL_7A0S_036
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
9PJ8|1|a|C|1101
9PJ8|1|a|U|1102
9PJ8|1|a|C|1103
9PJ8|1|a|A|1104
9PJ8|1|a|G|1105
9PJ8|1|a|U|1106
9PJ8|1|a|G|1107
*
9PJ8|1|a|C|1223
9PJ8|1|a|U|1224
9PJ8|1|a|U|1225
9PJ8|1|a|A|1226
9PJ8|1|a|A|1227
9PJ8|1|a|G|1228
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain V
- 50S ribosomal protein bL37
- Chain g
- 50S ribosomal protein L6
- Chain i
- 50S ribosomal protein L13
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