IL_9PJ8_110
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGGAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9PJ8|1|a|U|1210, 9PJ8|1|a|U|1213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_110 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.108
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9PJ8|1|a|G|1107
9PJ8|1|a|G|1108
9PJ8|1|a|G|1109
9PJ8|1|a|A|1110
9PJ8|1|a|A|1111
9PJ8|1|a|A|1112
9PJ8|1|a|G|1113
*
9PJ8|1|a|C|1207
9PJ8|1|a|G|1208
9PJ8|1|a|A|1209
9PJ8|1|a|U|1210
9PJ8|1|a|A|1211
9PJ8|1|a|A|1212
9PJ8|1|a|U|1213
9PJ8|1|a|G|1214
9PJ8|1|a|U|1215
9PJ8|1|a|A|1216
9PJ8|1|a|G|1217
9PJ8|1|a|C|1218
9PJ8|1|a|G|1219
9PJ8|1|a|G|1220
9PJ8|1|a|G|1221
9PJ8|1|a|G|1222
9PJ8|1|a|C|1223
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain V
- 50S ribosomal protein bL37
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain l
- 50S ribosomal protein L16
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