IL_9PJ8_112
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGUAGACAA*UCAAG
- Length
- 14 nucleotides
- Bulged bases
- 9PJ8|1|a|A|1129
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_112 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2325
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9PJ8|1|a|C|1126
9PJ8|1|a|G|1127
9PJ8|1|a|U|1128
9PJ8|1|a|A|1129
9PJ8|1|a|G|1130
9PJ8|1|a|A|1131
9PJ8|1|a|C|1132
9PJ8|1|a|A|1133
9PJ8|1|a|A|1134
*
9PJ8|1|a|U|1191
9PJ8|1|a|C|1192
9PJ8|1|a|A|1193
9PJ8|1|a|A|1194
9PJ8|1|a|G|1195
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L6
Coloring options: