IL_9PJ8_125

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUG*UGAG

Length

7 nucleotides

Bulged bases

9PJ8|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_125 not in the Motif Atlas

Geometric match to IL_2ET8_003

Geometric discrepancy: 0.3722

The information below is about IL_2ET8_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9PJ8|1|a|C|1597
9PJ8|1|a|U|1598
9PJ8|1|a|G|1599
*
9PJ8|1|a|U|1762
9PJ8|1|a|G|1763
9PJ8|1|a|A|1764
9PJ8|1|a|G|1765

Current chains

Chain a

23S rRNA

Nearby chains