IL_9PJ8_129

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUGG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ8_129 not in the Motif Atlas

Geometric match to IL_8CRE_438

Geometric discrepancy: 0.2838

The information below is about IL_8CRE_438

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9PJ8|1|a|U|1655
9PJ8|1|a|G|1656
9PJ8|1|a|U|1657
9PJ8|1|a|G|1658
9PJ8|1|a|G|1659
*
9PJ8|1|a|U|1695
9PJ8|1|a|G|1696
9PJ8|1|a|A|1697
9PJ8|1|a|G|1698
9PJ8|1|a|G|1699

Current chains

Chain a

23S rRNA

Nearby chains