IL_9PJ8_143
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGCGAAG*CGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9PJ8|1|a|G|1984, 9PJ8|1|a|U|1999, 9PJ8|1|a|U|2003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_143 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.0936
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|a|U|1981
9PJ8|1|a|G|1982
9PJ8|1|a|C|1983
9PJ8|1|a|G|1984
9PJ8|1|a|A|1985
9PJ8|1|a|A|1986
9PJ8|1|a|G|1987
*
9PJ8|1|a|C|1996
9PJ8|1|a|G|1997
9PJ8|1|a|A|1998
9PJ8|1|a|U|1999
9PJ8|1|a|G|2000
9PJ8|1|a|U|2001
9PJ8|1|a|A|2002
9PJ8|1|a|U|2003
9PJ8|1|a|A|2004
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: