IL_9PJ8_166
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CCGAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_166 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1014
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9PJ8|1|a|C|2648
9PJ8|1|a|C|2649
9PJ8|1|a|G|2650
9PJ8|1|a|A|2651
9PJ8|1|a|G|2652
*
9PJ8|1|a|C|2662
9PJ8|1|a|G|2663
9PJ8|1|a|A|2664
9PJ8|1|a|C|2665
9PJ8|1|a|G|2666
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain l
- 50S ribosomal protein L16
Coloring options: