IL_9PJ8_177
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 9PJ8|1|a|A|2947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ8_177 not in the Motif Atlas
- Homologous match to IL_7A0S_098
- Geometric discrepancy: 0.0869
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9PJ8|1|a|G|2919
9PJ8|1|a|A|2920
9PJ8|1|a|U|2921
9PJ8|1|a|A|2922
9PJ8|1|a|A|2923
9PJ8|1|a|C|2924
*
9PJ8|1|a|G|2944
9PJ8|1|a|G|2945
9PJ8|1|a|A|2946
9PJ8|1|a|A|2947
9PJ8|1|a|G|2948
9PJ8|1|a|C|2949
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain g
- 50S ribosomal protein L6
- Chain i
- 50S ribosomal protein L13
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