IL_9PJ9_012
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UAUCAG*CUUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9PJ9|1|A|U|246, 9PJ9|1|A|U|282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PJ9_012 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.2068
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9PJ9|1|A|U|244
9PJ9|1|A|A|245
9PJ9|1|A|U|246
9PJ9|1|A|C|247
9PJ9|1|A|A|248
9PJ9|1|A|G|249
*
9PJ9|1|A|C|279
9PJ9|1|A|U|280
9PJ9|1|A|U|281
9PJ9|1|A|U|282
9PJ9|1|A|G|283
9PJ9|1|A|A|284
9PJ9|1|A|C|285
9PJ9|1|A|G|286
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
- Chain X
- AURKAIP1/COX24 domain-containing protein
Coloring options: