IL_9PJ9_127

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

9PJ9|1|a|U|1737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_127 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.3095

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9PJ9|1|a|G|1617
9PJ9|1|a|U|1618
9PJ9|1|a|A|1619
9PJ9|1|a|G|1620
*
9PJ9|1|a|U|1734
9PJ9|1|a|G|1735
9PJ9|1|a|A|1736
9PJ9|1|a|U|1737
9PJ9|1|a|C|1738

Current chains

Chain a

23S rRNA

Nearby chains