IL_9PJ9_166

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9PJ9|1|a|G|2758, 9PJ9|1|a|A|2759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ9_166 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1197

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9PJ9|1|a|C|2692
9PJ9|1|a|U|2693
9PJ9|1|a|C|2694
*
9PJ9|1|a|G|2756
9PJ9|1|a|C|2757
9PJ9|1|a|G|2758
9PJ9|1|a|A|2759
9PJ9|1|a|G|2760

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32