IL_9PKB_084

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9PKB|1|L5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PKB_084 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1269

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9PKB|1|L5|G|2001
9PKB|1|L5|A|2002
9PKB|1|L5|G|2003
9PKB|1|L5|U|2004
9PKB|1|L5|G|2005
*
9PKB|1|L5|C|2014
9PKB|1|L5|U|2015
9PKB|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11