IL_9PKB_120

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PKB_120 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.1586

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.4

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9PKB|1|L5|U|3715
9PKB|1|L5|C|3716
9PKB|1|L5|A|3717
9PKB|1|L5|A2M|3718
9PKB|1|L5|A|3719
9PKB|1|L5|G|3720
9PKB|1|L5|U|3721
*
9PKB|1|L5|A|3732
9PKB|1|L5|A|3733
9PKB|1|L5|U|3734
9PKB|1|L5|G|3735
9PKB|1|L5|A|3736
9PKB|1|L5|A|3737
9PKB|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a