IL_9PKB_229
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 9PKB|1|S2|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PKB_229 not in the Motif Atlas
- Homologous match to IL_9H3G_202
- Geometric discrepancy: 0.242
- The information below is about IL_9H3G_202
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9PKB|1|S2|G|952
9PKB|1|S2|C|953
9PKB|1|S2|U|954
9PKB|1|S2|A|955
9PKB|1|S2|G|956
*
9PKB|1|S2|C|967
9PKB|1|S2|U|968
9PKB|1|S2|U|969
9PKB|1|S2|G|970
9PKB|1|S2|G|971
9PKB|1|S2|A|972
9PKB|1|S2|C|973
9PKB|1|S2|C|974
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 40S ribosomal protein S3a
- Chain SO
- Small ribosomal subunit protein uS11
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