IL_9PKB_249
3D structure
- PDB id
- 9PKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9PKB|1|S2|C|1331, 9PKB|1|S2|U|1494, 9PKB|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKB|1|S2|U|1329
9PKB|1|S2|G|1330
9PKB|1|S2|C|1331
9PKB|1|S2|A|1332
9PKB|1|S2|U|1333
9PKB|1|S2|G|1334
9PKB|1|S2|G|1335
*
9PKB|1|S2|U|1492
9PKB|1|S2|C|1493
9PKB|1|S2|U|1494
9PKB|1|S2|G|1495
9PKB|1|S2|U|1496
9PKB|1|S2|G|1497
9PKB|1|S2|A|1498
9PKB|1|S2|U|1499
9PKB|1|S2|G|1500
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain CD
- Isoform 2 of SERPINE1 mRNA-binding protein 1
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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