IL_9PKD_124
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG
- Length
- 16 nucleotides
- Bulged bases
- 9PKD|1|L5|A2M|3785, 9PKD|1|L5|C|3791, 9PKD|1|L5|C|3810
- QA status
- Modified nucleotides: 5MC, A2M, OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|3781
9PKD|1|L5|5MC|3782
9PKD|1|L5|A|3783
9PKD|1|L5|A|3784
9PKD|1|L5|A2M|3785
9PKD|1|L5|U|3786
9PKD|1|L5|G|3787
9PKD|1|L5|C|3788
9PKD|1|L5|C|3789
9PKD|1|L5|U|3790
9PKD|1|L5|C|3791
9PKD|1|L5|OMG|3792
*
9PKD|1|L5|OMC|3808
9PKD|1|L5|G|3809
9PKD|1|L5|C|3810
9PKD|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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