IL_9PKD_216
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9PKD|1|S2|A|628, 9PKD|1|S2|U|630, 9PKD|1|S2|U|631
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|G|611
9PKD|1|S2|U|612
9PKD|1|S2|G|613
9PKD|1|S2|C|614
9PKD|1|S2|C|615
9PKD|1|S2|A|616
9PKD|1|S2|G|617
*
9PKD|1|S2|C|624
9PKD|1|S2|G|625
9PKD|1|S2|G|626
9PKD|1|S2|OMU|627
9PKD|1|S2|A|628
9PKD|1|S2|A|629
9PKD|1|S2|U|630
9PKD|1|S2|U|631
9PKD|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Small ribosomal subunit protein eS30
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