IL_9PKD_238
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|G|1168
9PKD|1|S2|G|1169
9PKD|1|S2|A|1170
9PKD|1|S2|G|1171
9PKD|1|S2|U|1172
9PKD|1|S2|A|1173
9PKD|1|S2|PSU|1174
9PKD|1|S2|G|1175
*
9PKD|1|S2|U|1186
9PKD|1|S2|G|1187
9PKD|1|S2|A|1188
9PKD|1|S2|A|1189
9PKD|1|S2|A|1190
9PKD|1|S2|C|1191
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
Coloring options: