IL_9PKG_056

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

(OMG)A(A2M)AG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9PKG|1|L5|A|1650, 9PKG|1|L5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|OMG|1522
9PKG|1|L5|A|1523
9PKG|1|L5|A2M|1524
9PKG|1|L5|A|1525
9PKG|1|L5|G|1526
*
9PKG|1|L5|C|1648
9PKG|1|L5|U|1649
9PKG|1|L5|A|1650
9PKG|1|L5|G|1651
9PKG|1|L5|U|1652
9PKG|1|L5|A|1653
9PKG|1|L5|G|1654
9PKG|1|L5|C|1655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Lj

60S ribosomal protein L37