IL_9PKG_069

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCGAA(PSU)*AAAC

Length

10 nucleotides

Bulged bases

9PKG|1|L5|G|1741

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|1739
9PKG|1|L5|C|1740
9PKG|1|L5|G|1741
9PKG|1|L5|A|1742
9PKG|1|L5|A|1743
9PKG|1|L5|PSU|1744
*
9PKG|1|L5|A|1786
9PKG|1|L5|A|1787
9PKG|1|L5|A|1788
9PKG|1|L5|C|1789

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21