3D structure

PDB id
9PKG (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
UGC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9PKG|1|S2|U|1101
9PKG|1|S2|G|1102
9PKG|1|S2|C|1103
*
9PKG|1|S2|G|1129
9PKG|1|S2|G|1130
9PKG|1|S2|G|1131

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain SR
Small ribosomal subunit protein eS17
Chain Sa
40S ribosomal protein S26
Chain Sb
Small ribosomal subunit protein eS27

Coloring options:

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