IL_9PN5_019

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

9PN5|1|A1|U|534, 9PN5|1|A1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.2

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9PN5|1|A1|G|531
9PN5|1|A1|A|532
9PN5|1|A1|A|533
9PN5|1|A1|U|534
9PN5|1|A1|G|535
9PN5|1|A1|U|536
9PN5|1|A1|A|537
9PN5|1|A1|G|538
*
9PN5|1|A1|U|553
9PN5|1|A1|A|554
9PN5|1|A1|U|555
9PN5|1|A1|U|556
9PN5|1|A1|A|557
9PN5|1|A1|U|558
9PN5|1|A1|A|559
9PN5|1|A1|G|560
9PN5|1|A1|C|561

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AM

60S ribosomal protein L14-A

Chain AS

Large ribosomal subunit protein eL20A