Motif IL_25001.3 Version IL_25001.3 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-4 | 3-11 | 4-6 | 5-13 | 6-11 | 7-10 | 8-9 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_022 | 8OI5 | 0.1742 | 2 | 1 | LSU rRNA | U | 551 | G | 552 | U | 553 | U | 554 | A | 555 | A | 557 | G | 558 | C | 559 | * | G | 527 | A | 528 | A | 529 | G | 531 | U | 532 | G | 533 | G | 534 | cWW | tSH | ncSH | tWH | cWH | cHW | ncBW | cWW | cWW | cSH |
| 2 | IL_8GLP_040 | 8GLP | 0.1637 | 2 | L5 | LSU rRNA | U | 911 | G | 912 | U | 913 | U | 914 | A | 915 | A | 917 | G | 918 | C | 919 | * | G | 745 | A | 746 | A | 747 | G | 749 | U | 750 | G | 751 | G | 752 | cWW | tSH | ncSH | tWH | cWH | cHW | cWW | cWW | cSH | |
| 3 | IL_9PN5_019 | 9PN5 | 0.0000 | 2 | A1 | LSU rRNA | U | 553 | A | 554 | U | 555 | U | 556 | A | 557 | A | 559 | G | 560 | C | 561 | * | G | 531 | A | 532 | A | 533 | G | 535 | U | 536 | A | 537 | G | 538 | cWW | tSH | cSH | tWH | cWH | cHW | ncBW | cWW | cWW | cSH |
| 4 | IL_9SUM_018 | 9SUM | 0.0984 | 2 | A | LSU rRNA | U | 502 | G | 503 | U | 504 | U | 505 | A | 506 | A | 508 | G | 509 | C | 510 | * | G | 480 | A | 481 | A | 482 | G | 484 | U | 485 | A | 486 | G | 487 | cWW | tSH | ncSH | tWH | cWH | cHW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUUAUAGC*GAAUGUGG | 1 |
| UGUUACAGC*GAAGGUGG | 1 |
| UAUUAUAGC*GAAUGUAG | 1 |
| UGUUAUAGC*GAAUGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUAUAG*AAUGUG | 1 |
| GUUACAG*AAGGUG | 1 |
| AUUAUAG*AAUGUA | 1 |
| GUUAUAG*AAUGUA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.11 | Max 0.18
Coloring options: