IL_9PN5_049
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 9PN5|1|A1|U|1191, 9PN5|1|A1|C|1192, 9PN5|1|A1|C|1316, 9PN5|1|A1|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.3
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9PN5|1|A1|C|1187
9PN5|1|A1|U|1188
9PN5|1|A1|C|1189
9PN5|1|A1|A|1190
9PN5|1|A1|U|1191
9PN5|1|A1|C|1192
9PN5|1|A1|A|1193
9PN5|1|A1|G|1194
*
9PN5|1|A1|C|1314
9PN5|1|A1|U|1315
9PN5|1|A1|C|1316
9PN5|1|A1|A|1317
9PN5|1|A1|A|1318
9PN5|1|A1|G|1319
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AH
- Large ribosomal subunit protein uL6A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- Large ribosomal subunit protein uL13A
- Chain AS
- Large ribosomal subunit protein eL20A
- Chain Am
- Ubiquitin-ribosomal protein eL40A fusion protein
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